Haas-Laursen, D. E., D. E. Hartley, and R. G. Prinn. "Optimizing an inverse method to deduce time-varying emissions of trace gases." Journal of Geophysical Research: Atmospheres 101, no. D17 (1996): 22823-22831.

Mahowald, N. M., R. G. Prinn, and P. J. Rasch. "Deducing CCl3F emissions using an inverse method and chemical transport models with assimilated winds." Journal of Geophysical Research: Atmospheres 102, no. D23 (1997): 28153-28168.

Cunnold, D. M., R. F. Weiss, R. G. Prinn, D. E. Hartley, P. G. Simmonds, P. J. Fraser, B. R. Miller, F. N. Alyea, and L. W. Porter. "GAGE/AGAGE measurements indicating reductions in global emissions of CCl3F and CCl2F2 in 1992–1994." Journal of Geophysical Research: Atmospheres 102, no. D1 (1997): 1259-1269.

Mahowald, N. M., P. J. Rasch, B. E. Eaton, S. Whittlestone, and R. G. Prinn. "Transport of 222radon to the remote troposphere using the Model of Atmospheric Transport and Chemistry and assimilated winds from ECMWF and the National Center for Environmental Prediction/NCAR." Journal of Geophysical Research: Atmospheres 102, no. D23 (1997): 28139-28151.

Miller, B. R., J. Huang, R. F. Weiss, R. G. Prinn, and P. J. Fraser. "Atmospheric trend and lifetime of chlorodifluoromethane (HCFC-22) and the global tropospheric OH concentration." Journal of Geophysical Research: Atmospheres 103, no. D11 (1998): 13237-13248.

Simmonds, P. G., S. J. O’Doherty, J. Huang, R. G. Prinn, R. G. Derwent, D. Ryall, G. Nickless, and D. M. Cunnold. "Calculated trends and the atmospheric abundance of 1,1,1,2-tetrafluoroethane, 1,1-dichloro-1-fluoroethane, and 1-chloro-1,1-difluoroethane using automated in-situ gas chromatography-mass spectrometry measurements recorded at Mace Head, Oct 94 - Mar 97." Journal of Geophysical Research: Atmospheres 103, no. D13 (1998): 16029-16037.

Simmonds, P. G., D. M. Cunnold, R. F. Weiss, R. G. Prinn, P. J. Fraser, A. McCulloch, F. N. Alyea, and S. J. O’Doherty. "Global trends and emission estimates of CCl4 from in situ background observations from July 1978 to June 1996." Journal of Geophysical Research: Atmospheres 103, no. D13 (1998): 16017-16027.

Mulquiney, J. E., J. A. Taylor, A. J. Jakeman, J. P. Norton, and R. G. Prinn. "A new inverse method for trace gas flux estimation: 2. Application to tropospheric CFCl3 fluxes." Journal of Geophysical Research: Atmospheres 103, no. D1 (1998): 1429-1442.

Harnisch, J., and R. G. Prinn. "Letters: Sulfur hexafluoride emissions." Environmental Science & Technology 33, no. 3 (1999): 56A.

Prinn, R. G., R. Zander, D. M. Cunnold, J. W. Elkins, A. Engel, P. J. Fraser, M.R. Gunson, M.K.W. Ko, E. Mahieu, J. Russell et al. "Long-lived ozone-related compounds [Chapter 1]." In Scientific assessment of ozone depletion: 1998. Geneva: World Meteorological Organization Global Ozone Research and Monitoring Project (National Oceanic and Atmospheric Administration ... [and others]), 1999.

Prinn, R. G., R. F. Weiss, P. J. Fraser, P. G. Simmonds, D. M. Cunnold, F. N. Alyea, S. J. O’Doherty, P. K. Salameh, B. R. Miller, J. Huang et al. "A history of chemically and radiatively important gases in air deduced from ALE/GAGE/AGAGE." Journal of Geophysical Research: Atmospheres 105, no. D14 (2000): 17751-17792.

Kleiman, G., and R. G. Prinn. "Measurement and deduction of emissions of trichloroethene, tetrachloroethene, and trichloromethane (chloroform) in the northeastern United States and southeastern Canada." Journal of Geophysical Research: Atmospheres 105, no. D23 (2000): 28875-28893.

Prinn, R. G.. "Measurement Equation for Trace Chemicals in Fluids and Solution of its Inverse." In Inverse Methods in Global Biogeochemical Cycles, edited by P. Kasibhatla, M. Heimann, P. J. Rayner, N. M. Mahowald, R. G. Prinn and D. E. Hartley, 3-18. American Geophysical Union, 2000.

Prinn, R. G.. "Measurement Equation for Trace Chemicals in Fluids and Solution of its Inverse." In Inverse Methods in Global Biogeochemical Cycles, edited by P. Kasibhatla, M. Heimann, P. J. Rayner, N. M. Mahowald, R. G. Prinn and D. E. Hartley, 3-18. American Geophysical Union, 2000.

Prinn, R. G., and J. Huang. "Comment on “Global OH trend inferred from methylchloroform measurements” by Maarten Krol et al." Journal of Geophysical Research: Atmospheres 106, no. D19 (2001): 23151-23157.

Prinn, R. G., J. Huang, R. F. Weiss, D. M. Cunnold, P. J. Fraser, P. G. Simmonds, A. McCulloch, C. Harth, P. K. Salameh, S. J. O’Doherty et al. "Evidence for Substantial Variations of Atmospheric Hydroxyl Radicals in the Past Two Decades." Science 292, no. 5523 (2001): 1882-1888.

O’Doherty, S. J., P. G. Simmonds, D. M. Cunnold, R. H. J. Wang, W. T. Sturges, P. J. Fraser, D. Ryall, R. G. Derwent, R. F. Weiss, P. K. Salameh et al. "In situ chloroform measurements at Advanced Global Atmospheric Gases Experiment atmospheric research stations from 1994 to 1998." Journal of Geophysical Research: Atmospheres 106, no. D17 (2001): 20429-20444.

Huang, J., and R. G. Prinn. "Critical evaluation of emissions of potential new gases for OH estimation." Journal of Geophysical Research: Atmospheres 107, no. D24 (2002): 4784.

Cunnold, D. M., P. L. Steele, P. J. Fraser, P. G. Simmonds, R. G. Prinn, R. F. Weiss, L. W. Porter, S. J. O’Doherty, R. L. Langenfelds, P. B. Krummel et al. "In situ measurements of atmospheric methane at GAGE/AGAGE sites during 1985–2000 and resulting source inferences." Journal of Geophysical Research: Atmospheres 107, no. D14 (2002): ACH - 20-1.

Lucas, D. D., and R. G. Prinn. "Mechanistic studies of dimethylsulfide oxidation products using an observationally constrained model." Journal of Geophysical Research: Atmospheres 107, no. D14 (2002): ACH - 12-1.

Prinn, R. G.. "The Cleansing Capacity of the Atmosphere." Annual Review of Environment and Resources 28, no. 1 (2003): 29-57.

Prinn, R. G.. "Ozone, Hydroxyl Radical, and Oxidative Capacity." In Treatise on Geochemistry, edited by H. D. H. Turekian, 1-19. Oxford: Pergamon, 2003.

Lucas, D. D., and R. G. Prinn. "Tropospheric distributions of sulfuric acid-water vapor aerosol nucleation rates from dimethylsulfide oxidation." Geophysical Research Letters 30, no. 22 (2003): 2136.

Simmonds, P. G., R. G. Derwent, A. J. Manning, P. J. Fraser, P. B. Krummel, S. J. O’Doherty, R. G. Prinn, D. M. Cunnold, B. R. Miller, R. H. J. Wang et al. "AGAGE Observations of Methyl Bromide and Methyl Chloride at Mace Head, Ireland, and Cape Grim, Tasmania, 1998–2001." Journal of Atmospheric Chemistry 47, no. 3 (2004): 243-269.

Prinn, R. G.. "Non-CO2 Greenhouse Gases [Chapter 9]." In The Global Carbon Cycle: Integrating Humans, Climate, and the Natural World, edited by C. B. Field and M. Raupach, 205-216. Washington D.C.: Island Press, 2004.